miRNAMap, miRNAMap 2.0 | Tool name | miRNAMap, miRNAMap 2.0 |
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| URL | 1. http://mirnamap.mbc.nctu.edu.tw/ |
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| Important features | Genomic network of microRNAs in metazoan genomes that are beneficial in inferring microRNA regulatory functions. miRNAMap 2.0, was developed to retrieve and store details of experimentally verified microRNAs and experimentally verified microRNA target genes in human, mouse, rat, and other metazoan genomes. |
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| Citations | Hsu PW, Huang HD, Hsu SD, Lin LZ, Tsou AP, Tseng CP, Stadler PF, Washietl S,
Hofacker IL. miRNAMap: genomic maps of microRNA genes and their target genes in
mammalian genomes. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D135-9.
PubMed PMID: 16381831 |
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| Year of publication | 2006 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | FIND TARGET: database, EXPERIMENTAL: microRNA data with evidence, SPECIES: rat, SPECIES: mouse, SPECIES: miscellaneous, 1. http://mirnamap.mbc.nctu.edu.tw/ , Genomic network of microRNAs in metazoan genomes that are beneficial in inferring microRNA regulatory functions. miRNAMap 2.0- was developed to retrieve and store details of experimentally verified microRNAs and experimentally verified microRNA target genes in human- mouse- rat- and other metazoan genomes., Hsu PW- Huang HD- Hsu SD- Lin LZ- Tsou AP- Tseng CP- Stadler PF- Washietl S-
Hofacker IL. miRNAMap: genomic maps of microRNA genes and their target genes in
mammalian genomes. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D135-9.
PubMed PMID: 16381831 , 2006, 100, Online/ downloadable , 1.TAXA OR SPECIES SUPPORTED INCLUDE: (Metazoan) H sapiens- M musculus- D. rerio- R. norvegicus- X. tropicalis- G. gallus- C. elegans- F. rubripes. M. domestica- D. melanogaster- A. gambiae- C. familiaris II. QUERY OR INPUT DATA: 1. Select keyword in microRNA or target gene 2. select species III. OUTPUT DATA: details on microRNA targets and expression profile. IV. ADDITIONAL INFORMATION: The algorithms miRanda- RNAhybrid and TargetScan are used to predict microRNA targetsites., Hsu SD- Chu CH- Tsou AP- Chen SJ- Chen HC- Hsu PW- Wong YH- Chen YH- Chen GH-
Huang HD. miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. Nucleic
Acids Res. 2008 Jan;36(Database issue):D165-9. Epub 2007 Nov 19. PubMed PMID:
18029362, Predict secondary structure of a given precursor microRNA., 3.8 FUNCTIONAL ANALYSIS: microRNA secondary structure |
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